PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.8NG103500.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family bHLH
Protein Properties Length: 520aa    MW: 53814.8 Da    PI: 4.9928
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.8NG103500.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH36.49.2e-12334376754
                          HHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS
                  HLH   7 erErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 
                          ++ErrRR+++N+++  Lr+++Pk +      K++ a+iL  AveY+k+L
  Pavir.8NG103500.1.p 334 MAERRRRKKLNDRLYMLRSVVPKiS------KMDRASILGDAVEYLKEL 376
                          79*********************66......****************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.675327376IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474598.9E-17330402IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.2E-14333382IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.0E-9333376IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.106.3E-16334388IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000835.73E-13334380No hitNo description
CDDcd048730.00206448489No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010440Biological Processstomatal lineage progression
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0050826Biological Processresponse to freezing
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 520 aa     Download sequence    Send to blast
MLPPFGNPLW PQDGCGAQQQ QQDAPPPTPM MLGATQPLGH EPQSLLSLSQ VSADLGGGVF  60
STPPVLDDEW YFNSAAGSGA QGSLLLAPPG LSLGAGSSQM FSLFNMGGAA PYDLHRFDLG  120
LSGGGGVSGG ELVPFAGAGS VSNSAPLPLI PAGNAGFLGS FGGFGTSPAQ MPEFGGLGGF  180
DMFNNGGGAG SSAPAPLASA SLAAPFSARG KAAVLRPLEI FPPVGAQPTL FQKRALRRNA  240
GEEDDDKKRK AEALAAAAGA SSAGGGDMVL EDADDDDGGS IDASGLNYDS EDARGVEDSG  300
KKDDKDSNTN STVTAGGAGD GKGKRKGMPA KNLMAERRRR KKLNDRLYML RSVVPKISKM  360
DRASILGDAV EYLKELLQKI NDLQNELESP PSTASLPPTP TSFHPLTPTL PTLPSRVKEE  420
LCTSALPSPT SQQPRVEVRM REGRAVNIHM FCARRPGLLL NAMKAIEGLG LDVQQAVVSC  480
FNGFTLDVFK AELCKDGPGL LPEEIKTVLM QSAGFHGVM*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1323341KRKGMPAKNLMAERRRRKK
2335342ERRRRKKL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004979362.10.0PREDICTED: transcription factor SCREAM2-like
SwissprotQ9LSE21e-113ICE1_ARATH; Transcription factor ICE1
TrEMBLK3ZI100.0K3ZI10_SETIT; Uncharacterized protein
STRINGSi026212m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP164637101
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G26744.46e-87bHLH family protein